Set of Perl and R scripts designed to assess the quality of sequencing data using multiple quality metrics
SeqControl is a set of Perl and R scripts designed to assess the quality of sequencing data using multiple quality metrics. The pipeline takes one or more sorted BAM files as input, and outputs multiple files generated with open-source software that describe different aspects of the data. This data can then be summarized into a single file. The SeqControl quality metric vales from various BAMs can also be used to create predictive models to estimate data quality.
Download the compressed SeqControl directory. Within SeqControl, you will find all the analysis scripts plus a folder containing sample files.